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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">But that would mean the user has to know how to call the function in this special way, which is probably asking too much.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Wouldn’t simply specifying the return type as being different from the argument work? And the compiler would work out t1 from the definition of len?<o:p></o:p></span></p>
<p class="MsoNormal">len = vonB(age,linf,k,ro);<o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal">template<typename t1, typename t2, typename t3><o:p></o:p></p>
<p class="MsoNormal">t1 vonB(const t2 age, const t3 linf, const t3 k,const t3 to)<span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p></o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> Steve Martell [mailto:SteveM@iphc.int]
<br>
<b>Sent:</b> Friday, June 27, 2014 1:31 PM<br>
<b>To:</b> Mark Maunder<br>
<b>Cc:</b> developers@admb-project.org; Alexandre Aires-Da-Silva; Carolina Minte-Vera; Sean Patrick Cox<br>
<b>Subject:</b> Re: [Developers] Template functions and documentation<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Sorry I pulled the send trigger to quickly, the baby woke up!
<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">What I was getting at is when you have function that returns a type that is not passed as one of the arguments. You can still use a template function but when you call it, you have to specify what the return type is. eg<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">len = vonB<dvar_vector>(age,linf,k,ro);<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">In this case you would write the template as:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">template<typename t1, typename t2, typename t3><o:p></o:p></p>
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<p class="MsoNormal">t1 vonB(const t2 age, const t3 linf, const t3 k,const t3 to)<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Steve<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Jun 27, 2014, at 12:19 PM, Mark Maunder <<a href="mailto:mmaunder@iattc.org">mmaunder@iattc.org</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Steve,</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal">Re: In this case, the function returns a dvector, but assigns it to a dvar_vector. <o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Yes, I recognize this. I think this can be solved by overloading the template with an explicit type for the return variable or making the return variable a third type.<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Mark<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span class="apple-converted-space"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> </span></span><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Steve
Martell [<a href="mailto:SteveM@iphc.int"><span style="color:purple">mailto:SteveM@iphc.int</span></a>]<span class="apple-converted-space"> </span><br>
<b>Sent:</b><span class="apple-converted-space"> </span>Friday, June 27, 2014 11:31 AM<br>
<b>To:</b><span class="apple-converted-space"> </span>Mark Maunder<br>
<b>Cc:</b><span class="apple-converted-space"> </span><a href="mailto:developers@admb-project.org"><span style="color:purple">developers@admb-project.org</span></a>; Alexandre Aires-Da-Silva; Carolina Minte-Vera; Sean Patrick Cox<br>
<b>Subject:</b><span class="apple-converted-space"> </span>Re: [Developers] Template functions and documentation</span><o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Hi Mark, Alex, Carolina<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Attached is a pretty comprehensive book on using template classes and template functions in C++. Its a great way to fall asleep at night.<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">There is a lot of things you can do with templates, but from my naive perspective its a great way to reduce the need for function overloading and only have a single copy of the function to maintain. The primary thing to remember is that
the compiler will write the actual code that gets implemented; therefore, the function templates are usually found in the header file (.h or .htp, or .hpp).<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">One thing to be aware of is return types that differ from the types passed to the function arguments. For example:<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">in the vonb.hpp file:<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">template<typename t1, typename t2><o:p></o:p></p>
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<p class="MsoNormal">t1 vonB(const t1 age, const t2 linf, const t2, vonbk)<o:p></o:p></p>
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<p class="MsoNormal">{<o:p></o:p></p>
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<p class="MsoNormal">return(linf*(1.-exp(-vonbk*age)));<o:p></o:p></p>
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<p class="MsoNormal">}<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">in your tpl file:<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">dvector age(1,5);<o:p></o:p></p>
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<p class="MsoNormal">age.fill_seqadd(1,1);<o:p></o:p></p>
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<p class="MsoNormal">dvar_vector len(1,5);<o:p></o:p></p>
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<p class="MsoNormal">len = vonB(age,linf,vbk);<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">In this case, the function returns a dvector, but assigns it to a dvar_vector. And this will be problematic.<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Steve<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">On Jun 27, 2014, at 11:05 A<o:p></o:p></p>
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<p class="MsoNormal">M, Mark Maunder <<a href="mailto:mmaunder@iattc.org"><span style="color:purple">mmaunder@iattc.org</span></a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Hi developers,</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">I am in the process or putting together a model that will be used to evaluate several growth equations so I thought I better try to use the ADMB project “approved” approach
for writing the functions. Below is a template function and documentation for the von Bertalanffy growth equation. I would appreciate any advice on doing this “correctly”.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Thanks,</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Mark</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">/**</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">\defgroup CONTRIB Contributed libraries</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">*/</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">/**</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">\ingroup CONTRIB</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">\defgroup CAPAM CAPAM created functions</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">*/</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">#include <admodel.h></span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">/** von Bertalanffy growth equation; constant objects.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> \ingroup CAPAM</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> \brief Calculate the length from a given age based on the von Bertalanffy equation. Written by Mark Maunder.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> \param age age of individual, \f$a\f$.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> \param Linf asymptotic length, \f$L_inf\f$.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> \param K growth rate, \f$K\f$.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> \param t0 age at zero length, \f$t_0\f$.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> \return length predicted length of individual. \f$L_inf*(1-exp(-K*(a-t0)))\f$.</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> */</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">template <typename type1, typename type1></span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">//can have multiple types so that they are used below in variable definitions, they can differ between function calls, but remain the same within a function call</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">//type1 is probably a long</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">//type2 is probably a dvariable (either a model parameter (Linf K t0) or a derived variable (length))</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">//may need a type3, which is a dvar_vector if age and length are vectors, where type 1 will be a vector</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">type1 vonB(const type1 &age, const type2 &Linf, const type2 &K, const type2 &t0)</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">{</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> type2 length = Linf*(1.-mfexp(-K*(age-t0)));</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> return (length);</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">} </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">//is length a bad word to use</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">//do we use ingroup for both groups and subgroups in doxygen documentation</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">//should we use mfexp?</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">//what if age and length are vectors, but age is a vector and length is a dvar_vector, do we need to overload the type with one with three variable types</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">//I couldn't work out how to put in the detailed description</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">//The equations did not work on my computer</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> </span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:13.5pt;font-family:"Helvetica","sans-serif"">_______________________________________________<br>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<hr size="3" width="100%" align="center">
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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