[ADMB Users] "xxglobal.tmp" error with tpl2rem

[Steve Martell]

Ben,

Try using the scripts that Arni posted at:

http://admb-project.org/community/editing-tools/admb-ide/scripts-linux.zip/view?searchterm=Scripts

Steve

On 3-Aug-09, at 10:09 PM, Bolker,Benjamin Michael wrote:

>
>   I'm just beginning to use AD Model Builder.
>  I have successfully (after some struggles) created a few different
> likelihood models, with results matching previous model fits in R.
> Now I'm trying to add a random effect.  Versions of the TPL file
> below compiled OK with tpl2cpp before I added the random effect;
> now, with tpl2rem, I'm getting
>
> cat: xxalloc4.tmp: No such file or directory
> cat: xxalloc5.tmp: No such file or directory
> Error executing command cat xxglobal.tmp   xxhtop.tmp   header.tmp    
> xxalloc1.tmp   xxalloc2.tmp   xxalloc3.tmp   xxalloc4.tmp     
> xxalloc5.tmp    xxtopm.tmp    xxalloc6.tmp > mccoypred4.cpp
>
>   There was an issue with similar keywords listed on the ADMB site,  
> but it
> was listed as "resolved".
>
>  I'm running on Ubuntu Linux 9.04, with a recent (?? can't find  
> version number ??)
> version of ADMB. (Maybe 9.0.202 from the google code page?)
>
>  I'd be happy to provide any other diagnostics/information if that  
> will
> help solve / diagnose ...
>
>  sincerely
>    Ben Bolker
>
>
>
> -------------------------------------
> DATA_SECTION
>
>  init_int nobs               // # of observations
>  init_int nblock             // # of blocks
>  init_vector killed(1,nobs)  // # killed per trial
>  init_vector size(1,nobs)    // size of individuals
>  init_vector initial(1,nobs) // starting density (# individuals)
>  init_matrix Z(1,nobs,1,nblock) // random-effects model matrix
>
> PARAMETER_SECTION
>
>  init_number c    // *mean* c value
>  init_number d
>  init_bounded_number h(0.0,1.0,1)
>  init_number g
>  init_bounded_number sigma_c(0.00001,1.0,1)
>  random_effects_vector u(1,nblock)
>  vector prob(1,nobs)
>  vector cvec(1,nobs)
>  objective_function_value f
>
> PROCEDURE_SECTION
>  // compute vector of c values
>  cvec = c + sigma_c*(Z*u)
>  // power-Ricker
>  prob = 1/(1/(elem_prod(cvec,elem_prod(pow(size/d,g),exp(-size/d)))) 
> +h*initial);
>  // binomial negative log-likelihood
>  f -= sum( log_comb(initial,killed)+
>            elem_prod(killed,log(prob))+
>            elem_prod(initial-killed,log(1-prob)));
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Steve Martell
s.martell at fisheries.ubc.ca