[ADMB Users] Unknown error message: corrupt .tpl file?
John Sibert
sibert at hawaii.edu
Mon Nov 16 16:50:59 PST 2009
Your run-time -gbs argument seems to request 30Gb! Does it run with
(much) smaller arguments? If so, you could try increasing the argument
until it crashes.
John
kvk wrote:
> Hi John~
>
> Thanks for the newer version. Johnoel had suggested the same thing,
> and after installation I have the same issue. As it is only this .tpl
> file that currently produces the issue, and my other models run fine,
> I'm wondering if it's not some specific to the file itself, even
> though I've recreated it.
>
> Outputs from the commands appear correct:
>
> arctos at arctos:~$ which g++
> /usr/bin/g++
>
> arctos at arctos:~$ which admb
> /home/arctos/admb/bin/admb
>
> arctos at arctos:~$ echo $ADMB_HOME
> /home/arctos/admb
>
>
> *** tpl2cpp goa
>
> *** adcomp goa
> g++ -c -O3 -Wno-deprecated -D__GNUDOS__ -Dlinux -DOPT_LIB -
> DUSE_LAPLACE -fpermissive -I. -I/home/arctos/admb/include goa.cpp
>
> *** adlink goa
> g++ -s -L/home/arctos/admb/lib goa.o -ldf1b2stub -ladmod -ladt -lado -
> ldf1b2stub -ladmod -ladt -lado -o goa
>
> Compilation finished at Mon Nov 16 15:29:11
>
> The next command would run the model with a memory argument (-gbs
> 30000000000) which then results in the error code.
>
> Thank you!
>
> On Nov 17, 6:42 am, John Sibert <sib... at hawaii.edu> wrote:
>
>> It is hard to know what is causing the problem. You might try installing
>> a more up-to-date version of ADMB. Try this one:http://admb-project.googlecode.com/files/admb-9.0.363-intel-linux64-g...
>>
>> I routinely use g++ (Ubuntu 4.3.3-5ubuntu4) 4.3.3 on ubuntu 9.04 without
>> drama.
>>
>> If the problem persists please send messages produced by tpl2cpp (or
>> tpl2rem as the case may be) and mygcco.
>>
>> Also please send the output from
>> $ which g++
>> $ which admb
>> $ echo $ADMB_HOME
>>
>> For instance, I get
>> K:~$ which g++
>> /usr/bin/g++
>> K:~$ which admb
>> /home/jsibert/admb/trunk/build/dists/admb_gcc411_fedora8/bin/admb
>> K:~$ echo $ADMB_HOME
>> /home/jsibert/admb/trunk/build/dists/admb_gcc411_fedora8
>> K:~$
>>
>> Cheers,
>> John
>>
>>
>>
>> Kray VanKirk wrote:
>>
>>> Hi everyone~
>>>
>>> I'm running ADMB 9.09rc2 64 on Ubuntu 9.04 64-bit from within Emacs.
>>> The g++ 4.3 is installed along with 4.2; if I remove 4.3, ADMB cannot
>>> detect the g++. I'm getting an error on a .tpl file I have been
>>> revising; I'm wondering if it means a corrupt file, or possibly a
>>> 64/32 bit conflict somewhere. I can run other ADMB models to
>>> convergence with no problem.
>>>
>>> I have tried cutting and pasting to a fresh text file, but the error
>>> message remains. Running this file on my laptop produces the same
>>> error. It appears to be detecting the glibc correctly, but
>>> encountering some sort of memory allotment or registry error. Thank you!!
>>>
>>> kvk
>>>
>>> *** glibc detected *** goa: double free or corruption (out):
>>> 0x00007fb1bcdbe010 ***
>>> ======= Backtrace: =========
>>> /lib/libc.so.6[0x7fb1bf76bcb8]
>>> /lib/libc.so.6(cfree+0x76)[0x7fb1bf76e276]
>>> goa[0x4b9eb8]
>>> goa[0x4a1825]
>>> /lib/libc.so.6(exit+0x9d)[0x7fb1bf72a6ed]
>>> goa[0x4b3f0e]
>>> /lib/libc.so.6[0x7fb1bf727040]
>>> goa[0x49f179]
>>> goa[0x40a365]
>>> goa[0x410da4]
>>> goa[0x4bed2f]
>>> goa[0x446d7a]
>>> goa[0x43d5b9]
>>> goa[0x43da03]
>>> goa[0x426bd8]
>>> /lib/libc.so.6(__libc_start_main+0xe6)[0x7fb1bf7125a6]
>>> goa[0x403ab9]
>>> ======= Memory map: ========
>>> 00400000-00501000 r-xp 00000000 08:11
>>> 5972031 /media/disk/doc-goa/goa_distinct/goa
>>> 00701000-00702000 r--p 00101000 08:11
>>> 5972031 /media/disk/doc-goa/goa_distinct/goa
>>> 00702000-00704000 rw-p 00102000 08:11
>>> 5972031 /media/disk/doc-goa/goa_distinct/goa
>>> 00704000-00706000 rw-p 00704000 00:00 0
>>> 008d9000-00a4a000 rw-p 008d9000 00:00
>>> 0 [heap]
>>> 7fb1ac000000-7fb1ac021000 rw-p 7fb1ac000000 00:00 0
>>> 7fb1ac021000-7fb1b0000000 ---p 7fb1ac021000 00:00 0
>>> 7fb1b11dd000-7fb1bf6f4000 rw-p 7fb1b11dd000 00:00 0
>>> 7fb1bf6f4000-7fb1bf85c000 r-xp 00000000 08:01
>>> 12321955 /lib/libc-2.9.so <http://libc-2.9.so>
>>> 7fb1bf85c000-7fb1bfa5c000 ---p 00168000 08:01
>>> 12321955 /lib/libc-2.9.so <http://libc-2.9.so>
>>> 7fb1bfa5c000-7fb1bfa60000 r--p 00168000 08:01
>>> 12321955 /lib/libc-2.9.so <http://libc-2.9.so>
>>> 7fb1bfa60000-7fb1bfa61000 rw-p 0016c000 08:01
>>> 12321955 /lib/libc-2.9.so <http://libc-2.9.so>
>>> 7fb1bfa61000-7fb1bfa66000 rw-p 7fb1bfa61000 00:00 0
>>> 7fb1bfa66000-7fb1bfa7c000 r-xp 00000000 08:01
>>> 12320829 /lib/libgcc_s.so.1
>>> 7fb1bfa7c000-7fb1bfc7c000 ---p 00016000 08:01
>>> 12320829 /lib/libgcc_s.so.1
>>> 7fb1bfc7c000-7fb1bfc7d000 r--p 00016000 08:01
>>> 12320829 /lib/libgcc_s.so.1
>>> 7fb1bfc7d000-7fb1bfc7e000 rw-p 00017000 08:01
>>> 12320829 /lib/libgcc_s.so.1
>>> 7fb1bfc7e000-7fb1bfd02000 r-xp 00000000 08:01
>>> 12322106 /lib/libm-2.9.so <http://libm-2.9.so>
>>> 7fb1bfd02000-7fb1bff01000 ---p 00084000 08:01
>>> 12322106 /lib/libm-2.9.so <http://libm-2.9.so>
>>> 7fb1bff01000-7fb1bff02000 r--p 00083000 08:01
>>> 12322106 /lib/libm-2.9.so <http://libm-2.9.so>
>>> 7fb1bff02000-7fb1bff03000 rw-p 00084000 08:01
>>> 12322106 /lib/libm-2.9.so <http://libm-2.9.so>
>>> 7fb1bff03000-7fb1bfff4000 r-xp 00000000 08:01
>>> 5278116 /usr/lib/libstdc++.so.6.0.10
>>> 7fb1bfff4000-7fb1c01f4000 ---p 000f1000 08:01
>>> 5278116 /usr/lib/libstdc++.so.6.0.10
>>> 7fb1c01f4000-7fb1c01fb000 r--p 000f1000 08:01
>>> 5278116 /usr/lib/libstdc++.so.6.0.10
>>> 7fb1c01fb000-7fb1c01fd000 rw-p 000f8000 08:01
>>> 5278116 /usr/lib/libstdc++.so.6.0.10
>>> 7fb1c01fd000-7fb1c0210000 rw-p 7fb1c01fd000 00:00 0
>>> 7fb1c0210000-7fb1c0230000 r-xp 00000000 08:01
>>> 12321241 /lib/ld-2.9.so <http://ld-2.9.so>
>>> 7fb1c0289000-7fb1c0414000 rw-p 7fb1c0289000 00:00 0
>>> 7fb1c042c000-7fb1c042f000 rw-p 7fb1c042c000 00:00 0
>>> 7fb1c042f000-7fb1c0430000 r--p 0001f000 08:01
>>> 12321241 /lib/ld-2.9.so <http://ld-2.9.so>
>>> 7fb1c0430000-7fb1c0431000 rw-p 00020000 08:01
>>> 12321241 /lib/ld-2.9.so <http://ld-2.9.so>
>>> 7fff20a68000-7fff20a7d000 rw-p 7ffffffea000 00:00
>>> 0 [stack]
>>> 7fff20bff000-7fff20c00000 r-xp 7fff20bff000 00:00
>>> 0 [vdso]
>>> ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00
>>> 0 [vsyscall]
>>>
>>> ------------------------------------------------------------------------
>>>
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>>> Us... at admb-project.org
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>>>
>> --
>> John Sibert
>> Emeritus Researcher, SOEST
>> University of Hawaii at Manoa
>>
>> Visit the ADMB projecthttp://admb-project.org/
>>
>> _______________________________________________
>> Users mailing list
>> Us... at admb-project.orghttp://lists.admb-project.org/mailman/listinfo/users
>>
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>
--
John Sibert
Emeritus Researcher, SOEST
University of Hawaii at Manoa
Visit the ADMB project http://admb-project.org/
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