From arnima at hafro.is Tue Apr 22 11:15:14 2014 From: arnima at hafro.is (Arni Magnusson) Date: Tue, 22 Apr 2014 18:15:14 +0000 (GMT) Subject: [ADMB Users] ADMB course in Copenhagen 16-20 June Message-ID: Hi ADMB users, A five-day ADMB course is offered 16-20 June, at the ICES Headquarters downtown in sunny Copenhagen: http://admb-project.org/courses/upcoming http://ices.dk/news-and-events/Training/Pages/AD-Model-Builder-and-Stock-Assessment.aspx This is the third time Anders Nielsen and I teach this 5-day course and participants have said they learned a lot. Five days seems to be the right amount of time to reach the level required to independently use ADMB to build models for ongoing research projects. The syllabus is slightly fish-oriented, but the modelling techniques are general, going through simple regression (LM, NLME), random effects (LME, NLME, state-space), Bayesian inference, and uncertainty methods (delta method, profile likelihood, MCMC). The course fee is 750 Euros (for participants from ICES countries) and the application deadline is 5 May. The registration button is on the ICES webpage listed above. Please circulate to colleagues, and sorry about the short notice. Arni From parker at uw.edu Wed Apr 23 10:39:28 2014 From: parker at uw.edu (Michael Parker) Date: Wed, 23 Apr 2014 10:39:28 -0700 Subject: [ADMB Users] Failed ADMB install on OS X 10.9.2 Message-ID: Hoping someone can point in the correct direction. Good news is that I can duplicate the errors I'm getting when trying to install ADMB on OS X 10.9.2. I've attempted this install on two Macs running the same OS/software with the same results. Bad news is that I'm getting errors and a program that doesn't want to work. I'm trying to install ADMB 11.1 (64-bit) on an OS X 10.9.2 box running xcode 5.1.1 and the April 2014 command line toolkit. I get 2 make errors: 2 errors generated. make[2]: *** [../../build/objects/dist/saflp-linad99-ufstream.obj] Error 1 make[1]: *** [admbsaf] Error 2 make: *** [c++-all] Error 2 And can not compile and run the simple test commands afterwards. I attempt to run this: sudo ~/admb/admb simple.tpl and get this error: clang: error: no such file or directory: '/Users/parker/admb/build/dist/lib/libadmb.a' Error: Could not build simple And sure enough, the /lib directory is empty - which would explain the error. Any assistance would be appreciated. -- Michael Parker E-MAIL: parker at uw.edu 206-616-0854 FAX: 206-616-8689 Director of Computing, Aquatic & Fishery Sciences University of Washington, Box 355020, Seattle, WA 98195 -------------- next part -------------- An HTML attachment was scrubbed... URL: From tomyun at gmail.com Mon Apr 28 17:49:52 2014 From: tomyun at gmail.com (Kyungdahm Yun) Date: Mon, 28 Apr 2014 17:49:52 -0700 Subject: [ADMB Users] Homebrew formula for ADMB on Mac OS X Message-ID: Dear ADMB users, I just came across ADMB during the class and found no formula created for Homebrew which is a popular package manager on Mac OS X. You can install ADMB via Homebrew like: $ brew install https://raw.githubusercontent.com/tomyun/homebrew-science/admb?11.1/admb.rb or $ brew install admb once merged to the Homebrew-science repository. It?s not up in the upstream since I wanted to make sure it really works for the users before sending a pull request. Homebrew users, if there are any, please test this formula to install ADMB and check if there is any problem on your workflow. Developers, I?d like to inform that a trivial patch had to be applied to two files (ufstream.cpp, cifstrem.cpp) on `std::_Ios_Openmode` as you can see from the diff inside the above Ruby formula. It might have been due to the recent migration to clang compiler of Xcode build tools. I confirmed it worked on Mac OS X 10.9 with Xcode 5 and 10.7 with Xcode 4. It?d be a better idea to fix upstream and check other platforms as well. Best, Kyungdahm From johnoel at hawaii.edu Mon Apr 28 22:06:02 2014 From: johnoel at hawaii.edu (Johnoel Ancheta) Date: Mon, 28 Apr 2014 19:06:02 -1000 Subject: [ADMB Users] Failed ADMB install on OS X 10.9.2 In-Reply-To: References: Message-ID: Try http://www.admb-project.org/buildbot/documentation/INSTALL.html Or bug, Jim Ianelli. On Wed, Apr 23, 2014 at 7:39 AM, Michael Parker wrote: > Hoping someone can point in the correct direction. > > Good news is that I can duplicate the errors I'm getting when trying to > install ADMB on OS X 10.9.2. I've attempted this install on two Macs > running the same OS/software with the same results. > > Bad news is that I'm getting errors and a program that doesn't want to > work. > > I'm trying to install ADMB 11.1 (64-bit) on an OS X 10.9.2 box running > xcode 5.1.1 and the April 2014 command line toolkit. > > I get 2 make errors: > > 2 errors generated. > > make[2]: *** [../../build/objects/dist/saflp-linad99-ufstream.obj] Error 1 > > make[1]: *** [admbsaf] Error 2 > > make: *** [c++-all] Error 2 > > > And can not compile and run the simple test commands afterwards. I attempt > to run this: > > sudo ~/admb/admb simple.tpl > > and get this error: > > clang: error: no such file or directory: > '/Users/parker/admb/build/dist/lib/libadmb.a' > > Error: Could not build simple > And sure enough, the /lib directory is empty - which would explain the > error. > > Any assistance would be appreciated. > > -- > Michael Parker E-MAIL: parker at uw.edu > 206-616-0854 FAX: 206-616-8689 > Director of Computing, Aquatic & Fishery Sciences > University of Washington, Box 355020, Seattle, WA 98195 > > _______________________________________________ > Users mailing list > Users at admb-project.org > http://lists.admb-project.org/mailman/listinfo/users > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From johnoel at hawaii.edu Mon Apr 28 22:12:10 2014 From: johnoel at hawaii.edu (Johnoel Ancheta) Date: Mon, 28 Apr 2014 19:12:10 -1000 Subject: [ADMB Users] Homebrew formula for ADMB on Mac OS X In-Reply-To: References: Message-ID: Sounds interesting. Would you like to contribute creating the package? The ios openmode has already been fixed in the trunk. try http://www.admb-project.org/buildbot/documentation/INSTALL.html On Mon, Apr 28, 2014 at 2:49 PM, Kyungdahm Yun wrote: > Dear ADMB users, > > I just came across ADMB during the class and found no formula created for > Homebrew which is a popular package manager on Mac OS X. > > You can install ADMB via Homebrew like: > > $ brew install > https://raw.githubusercontent.com/tomyun/homebrew-science/admb-11.1/admb.rb > > or > > $ brew install admb > > once merged to the Homebrew-science repository. It's not up in the > upstream since I wanted to make sure it really works for the users before > sending a pull request. > > Homebrew users, if there are any, please test this formula to install ADMB > and check if there is any problem on your workflow. > > Developers, I'd like to inform that a trivial patch had to be applied to > two files (ufstream.cpp, cifstrem.cpp) on `std::_Ios_Openmode` as you can > see from the diff inside the above Ruby formula. It might have been due to > the recent migration to clang compiler of Xcode build tools. I confirmed it > worked on Mac OS X 10.9 with Xcode 5 and 10.7 with Xcode 4. It'd be a > better idea to fix upstream and check other platforms as well. > > Best, > Kyungdahm > _______________________________________________ > Users mailing list > Users at admb-project.org > http://lists.admb-project.org/mailman/listinfo/users > -------------- next part -------------- An HTML attachment was scrubbed... URL: