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Hi Ben,<br>
<br>
Committed the changes suggested by Dave to the admb <br>
version control.<br>
<br>
<small><small><small>Index: src/df1b2-separable/tpl2rem.lex<br>
===================================================================<br>
--- src/df1b2-separable/tpl2rem.lex (revision 736)<br>
+++ src/df1b2-separable/tpl2rem.lex (working copy)<br>
@@ -3942,8 +3942,17 @@<br>
<br>
#else<br>
strcpy(outcommand,"cat xxglobal.tmp xxhtop.tmp
header.tmp "<br>
- " xxalloc1.tmp xxalloc2.tmp xxalloc3.tmp
xxalloc4.tmp "<br>
- " xxalloc5.tmp xxtopm.tmp xxalloc6.tmp > ");<br>
+ " xxalloc1.tmp xxalloc2.tmp xxalloc3.tmp ");<br>
+ if (report_defined)<br>
+ {<br>
+ strcat(outcommand," xxalloc4.tmp");<br>
+ }<br>
+ if (preliminary_calcs_defined)<br>
+ {<br>
+ strcat(outcommand," xxalloc5.tmp");<br>
+ } <br>
+ strcat(outcommand, " xxtopm.tmp xxalloc6.tmp > ");<br>
+<br>
strcpy(outcommand2,"cat tfile1 tfile2 tfile3 tfile4 >
");<br>
<br>
strcpy(outcommand3a,"sed -n -f ");</small></small></small><br>
<br>
<br>
Johnoel<br>
<br>
On 8/23/10 8:02 AM, John Sibert wrote:
<blockquote cite="mid:4C72B7BB.1020504@hawaii.edu" type="cite">Can
you please look into this and reply to Ben and the list?
<br>
<br>
Thanks,
<br>
John
<br>
<br>
-------- Original Message --------
<br>
Subject: Re: [ADMB Users] new version of R2admb on R-forge
<br>
Date: Mon, 23 Aug 2010 12:27:45 -0400
<br>
From: Ben Bolker <a class="moz-txt-link-rfc2396E" href="mailto:bolker@ufl.edu"><bolker@ufl.edu></a>
<br>
To: <a class="moz-txt-link-abbreviated" href="mailto:davef@otter-rsch.com">davef@otter-rsch.com</a> <a class="moz-txt-link-rfc2396E" href="mailto:davef@otter-rsch.com"><davef@otter-rsch.com></a>
<br>
CC: <a class="moz-txt-link-abbreviated" href="mailto:users@admb-project.org">users@admb-project.org</a> <a class="moz-txt-link-rfc2396E" href="mailto:users@admb-project.org"><users@admb-project.org></a>,
Motoki Wu <a class="moz-txt-link-rfc2396E" href="mailto:apewu@ucdavis.edu"><apewu@ucdavis.edu></a>
<br>
<br>
<br>
<br>
Can this/has this gone in the 'official' source tree so it gets
taken
<br>
care of in the next release?
<br>
<br>
thanks,
<br>
Ben Bolker
<br>
<br>
dave fournier wrote:
<br>
<blockquote type="cite"> Ben Bolker wrote:
<br>
<br>
OK in that case one can get rid of the erros reported in the
liver gamma
<br>
function by modifying the
<br>
lex input file like this.
<br>
get rid of
<br>
/*
<br>
strcpy(outcommand,"cat xxglobal.tmp xxhtop.tmp
header.tmp "
<br>
" xxalloc1.tmp xxalloc2.tmp xxalloc3.tmp
xxalloc4.tmp"
<br>
" xxalloc5.tmp xxtopm.tmp xxalloc6.tmp> ");
<br>
*/
<br>
and change to
<br>
strcpy(outcommand,"cat xxglobal.tmp xxhtop.tmp
header.tmp "
<br>
" xxalloc1.tmp xxalloc2.tmp xxalloc3.tmp ");
<br>
if (report_defined)
<br>
{
<br>
strcat(outcommand," xxalloc4.tmp");
<br>
}
<br>
if (preliminary_calcs_defined)
<br>
{
<br>
strcat(outcommand," xxalloc5.tmp");
<br>
}
<br>
This file is named remod10 on my version. I can supply
other
<br>
detailas etc if required.
<br>
<br>
<br>
<br>
<blockquote type="cite"> dave fournier wrote:
<br>
<br>
<blockquote type="cite"> Ben Bolker wrote:
<br>
<br>
Well there is some confusion because it appears to me that
Motoki was
<br>
using tpl2rem on simple.tpl
<br>
which has no random effects.
<br>
I say this because my version of tpl2cpp does not produce
any error
<br>
message.
<br>
<br>
Once that is settled
<br>
for tpl2rem it would be simple modify the cat ... line
to exclude the
<br>
missing files.
<br>
<br>
<br>
</blockquote>
It is already settled.
<br>
As I explained, Motoki's problem came about because R2admb
flagged the
<br>
warning message about 'safe mode' as an error (it no longer
does).
<br>
Motoki got confused (I think) by the bit of code that was
used to flag
<br>
the 'xxalloc' warnings and thought that was the problem with
the code.
<br>
By default the current version of R2admb runs simple.tpl
just fine,
<br>
with a warning message on some versions about 'safe' mode
being
<br>
deprecated. It filters xxalloc warnings.
<br>
<br>
cheers
<br>
Ben
<br>
<br>
<br>
<br>
</blockquote>
<br>
</blockquote>
<br>
<br>
</blockquote>
<br>
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