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</o:shapelayout></xml><![endif]--></head><body lang=EN-US link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>Hi Mollie,<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>Thanks to your modifying the path, your computer now has two places where it can search for ADMB binaries: <o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>/usr/local/, and the folder on your desktop. Unfortunately, when you call admb, it appears to go to /usr/local/ first and never sees the new version. You can tell this because the command <o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif"'> </span><span style='font-family:"Calibri","sans-serif"'>g++ -O3 -L/usr/local/
admb/lib
</o:p></span></p><p class=MsoNormal><span style='font-family:"Calibri","sans-serif"'>includes the location /usr/local/ and does not include your new location.<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:"Calibri","sans-serif"'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>What I would do is delete the entire /usr/local/admb/ directory, in which case you won’t have this problem.<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif"'>An alternative is to go to </span><span style='font-family:"Calibri","sans-serif"'>/Users/molliebrooks/Desktop/admb-10.1//build/bin/ and rename 3 files<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:"Calibri","sans-serif"'> admb to admbNew<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:"Calibri","sans-seri
f"'>&nbs
; adcomp to adcompNew<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:"Calibri","sans-serif"'> adlink to adlinkNew<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:"Calibri","sans-serif"'>(or whatever naming scheme you prefer). Then edit the file admbNew and look for every instance of “adcomp” or “adlink” and change them to “adcompNew” and “adlinkNew”. Now you should have two independent methods of compiling ADMB by calling either admb or admbNew.<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:"Calibri","sans-serif"'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-family:"Calibri","sans-serif"'>-Ian<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif"'><o:p> </o:p></span></p><p class=MsoNormal><span style=
'font-si
libri","sans-serif"'><o:p> </o:p></span></p><div style='border:none;border-left:solid blue 1.5pt;padding:0in 0in 0in 4.0pt'><div><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in'><p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>From:</span></b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> users-bounces@admb-project.org [mailto:users-bounces@admb-project.org] <b>On Behalf Of </b>Mollie Brooks<br><b>Sent:</b> Saturday, May 14, 2011 2:11 PM<br><b>To:</b> users@admb-project.org<br><b>Subject:</b> Re: [ADMB Users] lgam in 10.0<o:p></o:p></span></p></div></div><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Hi, <o:p></o:p></p><div><p class=MsoNormal>Just an update... To try to answer my own question, I downloaded the source for 10.1 and followed the instructions in README.txt for Unix and GNU g++ since there weren't instructions for Macs. The install seems to have worked,
but I no
ace the version in /usr/local/<o:p></o:p></p></div><div><p class=MsoNormal>So I edited the file ./.bashrc to now have the lines<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><div><p class=MsoNormal>export ADMB_HOME=/Users/molliebrooks/Desktop/admb-10.1//build<o:p></o:p></p></div><div><p class=MsoNormal>export PATH=$ADMB_HOME/bin:$PATH<o:p></o:p></p></div></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>because I think that's the location of the necessary files. Then I reran the model and still got the error for lgam<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><div><p class=MsoNormal>*** Linking: adlink firdbhfec<o:p></o:p></p></div><div><p class=MsoNormal>g++ -O3 -L/usr/local/admb/lib firdbhfec.o -ldf1b2o -ladmod -ladt -lado -ldf1b2o -ladmod -ladt -lado -o firdbhfec<o:p></o:p></p></div><div><p class=MsoNormal>ld: duplicate symbol lgam(double)in /usr/local/admb/lib/libado.a(cgam
dev.obj)
libdf1b2o.a(df13tester.obj)<o:p></o:p></p></div><div><p class=MsoNormal>collect2: ld returned 1 exit status<o:p></o:p></p></div></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>So I found all the instances of "lgam" in df13tester.cpp<o:p></o:p></p></div><div><p class=MsoNormal>How much of this should I comment out? Is it just the definition of lgam(double) lines 943 to 1050? What about lines 309 and 314?<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><div><p class=MsoNormal><span style='font-size:8.5pt;font-family:"Menlo","serif";color:#D000A0'>double</span><span style='font-size:8.5pt;font-family:"Menlo","serif";color:black'> lgam ( </span><span style='font-size:8.5pt;font-family:"Menlo","serif";color:#D000A0'>double</span><span style='font-size:8.5pt;font-family:"Menlo","serif";color:black'> );</span><span style='font-size:8.5pt;font-family:"Menlo","serif";color:#D000A0'><o:p></o:p></span></p></div></div
><div><d
an style='font-size:8.5pt;font-family:"Menlo","serif";color:#D000A0'>double</span><span style='font-size:8.5pt;font-family:"Menlo","serif";color:black'> lgam();<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='color:black'><o:p> </o:p></span></p></div></div><div><p class=MsoNormal>thanks,<o:p></o:p></p></div><div><p class=MsoNormal>Mollie<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><div><div><div><p class=MsoNormal><span style='font-size:9.0pt'>Mollie Brooks<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:9.0pt'>Ph.D. Candidate<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:9.0pt'>NSF IGERT Fellow<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:9.0pt'>Biology Department<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:9.0pt'>University of Florida<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:9.0
pt'><a h
du">mbrooks@ufl.edu</a><o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:9.0pt'><a href="http://www.zoology.ufl.edu/mbrooks">www.zoology.ufl.edu/mbrooks</a><o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:9.0pt'><o:p> </o:p></span></p></div></div><p class=MsoNormal><o:p> </o:p></p></div><p class=MsoNormal><o:p> </o:p></p><div><div><p class=MsoNormal>On 14 May 2011, at 3:12 PM, Mollie Brooks wrote:<o:p></o:p></p></div><p class=MsoNormal><br><br><o:p></o:p></p><div><p class=MsoNormal>Hi ADMBers,<o:p></o:p></p><div><p class=MsoNormal>I'm running 10.0 on a mac and this old problem seems to have reoccurred<o:p></o:p></p></div><div><p class=MsoNormal><a href="http://groups.google.com/group/admb-users/browse_thread/thread/2e82a6c63586c83e">http://groups.google.com/group/admb-users/browse_thread/thread/2e82a6c63586c83e</a><o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>Th
e messag
></div><div><p class=MsoNormal>*** Linking: adlink firdbhfec<o:p></o:p></p></div><div><p class=MsoNormal>g++ -O3 -L/usr/local/admb/lib firdbhfec.o -ldf1b2o -ladmod -ladt -lado -ldf1b2o -ladmod -ladt -lado -o firdbhfec<o:p></o:p></p></div><div><p class=MsoNormal>ld: duplicate symbol lgam(double)in /usr/local/admb/lib/libado.a(cgamdev.obj) and /usr/local/admb/lib/libdf1b2o.a(df13tester.obj)<o:p></o:p></p></div><div><p class=MsoNormal>collect2: ld returned 1 exit status<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>Is this fixed in version 10.1? I saw in the readme.txt file that there was a fix to <span class=apple-style-span><span style='font-family:"Courier New"'>gammln functions.</span></span><o:p></o:p></p></div><div><p class=MsoNormal><span class=apple-style-span><span style='font-family:"Courier New"'>thanks,</span></span><o:p></o:p></p></div><div><p class=MsoNormal><span class=apple-style-span><span style='font-f
amily:"C
></span><o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><div><p class=MsoNormal><o:p> </o:p></p></div><p class=MsoNormal><o:p> </o:p></p></div></div><p class=MsoNormal>_______________________________________________<br>Users mailing list<br><a href="mailto:Users@admb-project.org">Users@admb-project.org</a><br><a href="http://lists.admb-project.org/mailman/listinfo/users">http://lists.admb-project.org/mailman/listinfo/users</a><o:p></o:p></p></div><p class=MsoNormal><o:p> </o:p></p></div></div></div></body></html>