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</o:shapelayout></xml><![endif]--></head><body lang=ES link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Yes Weihai,<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>I took out the reference to the compiler that Rtools wants listed in PATH.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Instead, I’m going to implement a solution provided by Gabor Grothendieck from the R-help list, reproduced below:<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoPlainText><span lang=EN-US style='color:#1F497D'>--<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US>The batchfiles Rcmd.bat, Rgui.bat temporarily add R and Rtools to your path by looking them up in the registry and then calling Rcmd.exe or Rgui.exe respectively. When R is finished the path is restored to what it was before. By using those its not necessary to have either<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US>on your path. These are self contained batch files with no dependencies so can simply be placed anywhere on the path in order to use them.<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US>For those and a few other batch files of interest to Windows users of R see:<o:p></o:p></span></p><p class=MsoPlainText><span lang=EN-US><a href="http://batchfiles.googlecode.com">http://batchfiles.googlecode.com</a><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>--<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Best,<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Rubén<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>De:</span></b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> weihailiu@gmail.com [mailto:weihailiu@gmail.com] <b>En nombre de </b>Weihai Liu<br><b>Enviado el:</b> jueves, 17 de noviembre de 2011 15:01<br><b>Para:</b> Rubén Roa<br><b>CC:</b> Users@admb-project.org<br><b>Asunto:</b> Re: [ADMB Users] Reporting a conflict between ADMB and Rtools on Windows systems<o:p></o:p></span></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>When you install ADMB-IDE by default, it will add the MinGW C++ compiler on your path, looking for some path like c:/gnu/gcc, so you will have two compiler at that same time, and they may in different version, I would suggest you remove the MinGW compiler from Rtools, such as remove c:\Rtools\MinGW\bin from your path, and test to see if Rtools works, I would not suggest to remove the one from ADMB-IDE, because that is the one Arni build admb from.<o:p></o:p></p><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal style='margin-bottom:12.0pt'>weihai<o:p></o:p></p><div><p class=MsoNormal>On Thu, Nov 17, 2011 at 3:53 AM, Rubén Roa <<a href="mailto:rroa@azti.es">rroa@azti.es</a>> wrote:<o:p></o:p></p><div><div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>Hi,</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>I have to work under Windows, it’s a company policy.</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>I’ve just found that there is a conflict between tools used to build R packages (Rtools) and ADMB due to the need to put Rtools compiler’s location in the PATH environmental variable to make Rtools work.</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>On a Windows 7 64bit with Rtools installed I installed ADMB-IDE latest version and although I could translate ADMB code to cpp code I could not build the cpp code into an executable via ADMB-IDE’s compiler.</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>On another Windows machine, a Windows Vista 32bits with Rtools installed I also installed the latest ADMB-IDE and this time it was not possible to create the .obj file on the way to build the executable when building with ADMB-IDE. On this machine I also have a previous ADMB version (6.0.1) that I used to run from the DOS shell. This ADMB also failed to build the .obj file.</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>Now, going to PATH, the location info to make Rtools is:</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>c:\Rtools\bin;c:\Rtools\MinGW\bin;c:\Rtools\MinGW64\bin;C:\Program Files (x86)\MiKTeX 2.9\miktex\bin;</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>If from this list I remove the reference to the compiler </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>c:\Rtools\MinGW\bin</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>then ADMB works again.</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>So beware of this conflict. Suggestion of a solution will be appreciated. Meanwhile, I run ADMB code in one computer and build R packages with Rtools in another computer.</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>Best</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>Ruben</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US>--</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='color:#888888'>Dr. Ruben H. Roa-Ureta</span><span style='color:#888888'><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='color:#888888'>Senior Researcher, AZTI Tecnalia,</span><span style='color:#888888'><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='color:#888888'>Marine Research Division,</span><span style='color:#888888'><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='color:#888888'>Txatxar</span><span lang=ES-TRAD style='color:#888888'>ramendi Ugartea z/g, 48395, Sukarrieta,</span><span style='color:#888888'><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=ES-TRAD style='color:#888888'>Bizkaia, Spain</span><span style='color:#888888'><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='color:#888888'> </span><span style='color:#888888'><o:p></o:p></span></p></div></div><p class=MsoNormal style='margin-bottom:12.0pt'><br>_______________________________________________<br>Users mailing list<br><a href="mailto:Users@admb-project.org">Users@admb-project.org</a><br><a href="http://lists.admb-project.org/mailman/listinfo/users" target="_blank">http://lists.admb-project.org/mailman/listinfo/users</a><o:p></o:p></p></div><p class=MsoNormal><o:p> </o:p></p></div></div></body></html>