<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Checking out a new copy and rebuilding got rid of the singular matrix error and the out of bounds error. So that's an improvement. </div></span></span></div><div><br class="webkit-block-placeholder"></div><div>On closer inspection, I realized that both computers were giving the "Possible overflow in DF_dvlog" warning this whole time. I went into the src code and found that this error could have been caused by accidentally taking the log of 0. I'm trying different starting values to see if I can avoid this. If that doesn't work I'll try posfun().</div><div><br class="webkit-block-placeholder"></div><div>There is one strange thing though...</div><div>svn said that I updated to a revision in the 600s, but when I use the -version command, it still says I'm on revision 591.</div><div>Does the -version command have to be updated manually?</div><div><br></div><div>thanks,</div><div>Mollie </div><div><br></div><div><div>On 12 Sep 2012, at 5:23 PM, John Sibert wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>It looks like the LU decomposition code was reverted in r602.<br><a href="http://admb-project.org/redmine/projects/issues/repository/revisions">http://admb-project.org/redmine/projects/issues/repository/revisions</a><br><br>John Sibert<br>Emeritus Researcher, SOEST<br>University of Hawaii at Manoa<br><br>Visit the ADMB project http://admb-project.org/<br><br>On 09/12/2012 09:23 AM, Johnoel Ancheta wrote:<br><blockquote type="cite">Try and recheckout a fresh copy first and rebuild all, then rerun...<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">On Wed, Sep 12, 2012 at 8:11 AM, Mollie Brooks <mbrooks@ufl.edu <mailto:mbrooks@ufl.edu>> wrote:<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"> I just noticed that I'm only getting this behaviour on one<br></blockquote><blockquote type="cite"> computer but not the other.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"> The one it works on gives this version info<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"> bash-3.2$ ./pond -version<br></blockquote><blockquote type="cite"> ADMB Program: ./pond<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"> ADMB-11.X safe libraries compiled with Gnu C++ 4.2.1(64bit)<br></blockquote><blockquote type="cite"> Build date: Aug 31 2012<br></blockquote><blockquote type="cite"> Revision: 591:595M<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"> Copyright (c) 2008-2012 ADMB Foundation and Regents of the<br></blockquote><blockquote type="cite"> University of California<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"> The computer where it doesn't work gives this version info<br></blockquote><blockquote type="cite"> [mbrooks@r11a-s18 Bernoulli]$ ./pond -version<br></blockquote><blockquote type="cite"> ADMB Program: ./pond<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"> ADMB-trunk safe libraries compiled with Gnu C++ 4.4.6(64bit)<br></blockquote><blockquote type="cite"> Build date: Aug 31 2012<br></blockquote><blockquote type="cite"> Revision: 591<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"> Could this be a problem with the ludecomp reversion? I'm using<br></blockquote><blockquote type="cite"> choleski_decomp() in this program.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"> thanks,<br></blockquote><blockquote type="cite"> Mollie<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"> Mollie Brooks<br></blockquote><blockquote type="cite"> Postdoctoral Researcher, Ponciano Lab<br></blockquote><blockquote type="cite"> Biology Department, University of Florida<br></blockquote><blockquote type="cite"> http://people.biology.ufl.edu/mbrooks<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"> On 12 Sep 2012, at 1:44 PM, Mollie Brooks wrote:<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"> > Hi,<br></blockquote><blockquote type="cite"> > I've been getting a lot of these warnings.<br></blockquote><blockquote type="cite"> > Possible overflow in DF_dvlog<br></blockquote><blockquote type="cite"> ><br></blockquote><blockquote type="cite"> > Then a lot of these<br></blockquote><blockquote type="cite"> > Error in matrix inverse -- matrix singular in inv(dmatrix)<br></blockquote><blockquote type="cite"> ><br></blockquote><blockquote type="cite"> > and then one of these that crashes the program<br></blockquote><blockquote type="cite"> > matrix bound exceeded -- row index too low in<br></blockquote><blockquote type="cite"> dmatrix::operator()value was0<br></blockquote><blockquote type="cite"> ><br></blockquote><blockquote type="cite"> > I'm almost certain that I'm accessing the matrix elements<br></blockquote><blockquote type="cite"> correctly and the matrix shouldn't be singular at the initial values.<br></blockquote><blockquote type="cite"> > Is there anything else that could lead to this series of errors?<br></blockquote><blockquote type="cite"> ><br></blockquote><blockquote type="cite"> > The other output is<br></blockquote><blockquote type="cite"> > Inner f = -inf<br></blockquote><blockquote type="cite"> > Newton raphson 1<br></blockquote><blockquote type="cite"> > f = nan max g = nan<br></blockquote><blockquote type="cite"> > Newton raphson 2<br></blockquote><blockquote type="cite"> > f = nan max g = nan<br></blockquote><blockquote type="cite"> ><br></blockquote><blockquote type="cite"> > thanks,<br></blockquote><blockquote type="cite"> > Mollie<br></blockquote><blockquote type="cite"> > _______________________________________________<br></blockquote><blockquote type="cite"> > Users mailing list<br></blockquote><blockquote type="cite"> > Users@admb-project.org <mailto:Users@admb-project.org><br></blockquote><blockquote type="cite"> > http://lists.admb-project.org/mailman/listinfo/users<br></blockquote><blockquote type="cite"> ><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"> _______________________________________________<br></blockquote><blockquote type="cite"> Users mailing list<br></blockquote><blockquote type="cite"> Users@admb-project.org <mailto:Users@admb-project.org><br></blockquote><blockquote type="cite"> http://lists.admb-project.org/mailman/listinfo/users<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">_______________________________________________<br></blockquote><blockquote type="cite">Users mailing list<br></blockquote><blockquote type="cite">Users@admb-project.org<br></blockquote><blockquote type="cite">http://lists.admb-project.org/mailman/listinfo/users<br></blockquote><br><br></div></blockquote></div><br></body></html>