<span style="font-family:arial,sans-serif;font-size:12.800000190734863px">Here is an example for the mark-recapture section of examples.</span><div style="font-family:arial,sans-serif;font-size:12.800000190734863px"><br></div>
<div style="font-family:arial,sans-serif;font-size:12.800000190734863px">Title:Fitting Cormack-Jolly-Seber Models to Capture-Recapture Data with ADMB and R2admb</div><div style="font-family:arial,sans-serif;font-size:12.800000190734863px">
<br></div><div style="font-family:arial,sans-serif;font-size:12.800000190734863px">url to pdf: <a href="https://github.com/downloads/jlaake/ADMB-Examples/CJSFixedEffects.pdf" target="_blank">https://github.com/downloads/jlaake/ADMB-Examples/CJSFixedEffects.pdf</a></div>
<div style="font-family:arial,sans-serif;font-size:12.800000190734863px"><br></div><div style="font-family:arial,sans-serif;font-size:12.800000190734863px">url to ADMB files: <a href="https://github.com/jlaake/ADMB-Examples/tree/master/Fixed%20Effect%20CJS" target="_blank">https://github.com/jlaake/ADMB-Examples/tree/master/Fixed%20Effect%20CJS</a></div>
<div style="font-family:arial,sans-serif;font-size:12.800000190734863px"><br></div><div style="font-family:arial,sans-serif;font-size:12.800000190734863px">Abstract: This example provides a template to fit any fixed effects CJS model to capture-recapture data.  This template and code to create the .DAT file are used in the R package marked (<a href="https://github.com/jlaake/marked" target="_blank">https://github.com/jlaake/marked</a>) when use.admb is TRUE. The pdf shows an example with the dipper data that is also analyzed with MARK (<a href="http://www.phidot.org/software/mark/" target="_blank">http://www.phidot.org/software/mark/</a>)  through the RMark package (<b style="line-height:12px;color:rgb(0,153,51)">cran</b><span style="line-height:12px;color:rgb(0,153,51)">.<a href="http://r-project.org/web/packages/" target="_blank">r-project.org/web/packages/</a></span><b style="line-height:12px;color:rgb(0,153,51)">RMark</b><span style="line-height:12px;color:rgb(0,153,51)">/index.html</span>) to show that the same results are obtained.</div>
<div style="font-family:arial,sans-serif;font-size:12.800000190734863px"><br></div><div style="font-family:arial,sans-serif;font-size:12.800000190734863px">A mixed-effects CJS template will follow at some point.  See <a href="https://github.com/jlaake/ADMB-Examples/tree/master/Individual%20Heterogeneity%20CJS" target="_blank">https://github.com/jlaake/ADMB-Examples/tree/master/Individual%20Heterogeneity%20CJS</a> for a work in progress that allows individual heterogeneity only.</div>