[Developers] beta compile failure on Ubuntu?

[Ben Bolker]

  (running under VMWare Fusion on Mac OS X.6, but I don't think that
matters)

  It looks like configure is getting confused and thinking my system is
64-bit ... ?

> uname -a
Linux ubuntu-10 2.6.32-25-generic #45-Ubuntu SMP Sat Oct 16 19:48:22 UTC
2010 i686 GNU/Linux

uname -m
i686  ## indicates 32-bit kernel

$ gcc -v
Using built-in specs.
Target: i486-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu
4.4.3-4ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs
--enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr
--enable-shared --enable-multiarch --enable-linker-build-id
--with-system-zlib --libexecdir=/usr/lib --without-included-gettext
--enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4
--program-suffix=-4.4 --enable-nls --enable-clocale=gnu
--enable-libstdcxx-debug --enable-plugin --enable-objc-gc
--enable-targets=all --disable-werror --with-arch-32=i486
--with-tune=generic --enable-checking=release --build=i486-linux-gnu
--host=i486-linux-gnu --target=i486-linux-gnu
Thread model: posix
gcc version 4.4.3 (Ubuntu 4.4.3-4ubuntu5)



bolker at ubuntu-10:/usr/local/src/admb-10.0Beta$ sudo ./configure
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking iostream usability... yes
checking iostream presence... yes
checking for iostream... yes
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... none needed
checking whether yytext is a pointer... no
checking for sed... yes
checking whether C++ compiler is 64-bit enabled... yes
checking for svnversion... yes
configure: creating ./config.status
config.status: creating GNUmakefile
config.status: creating admb_configure.h
config.status: creating scripts/bash/admb-bin

Configure completed for admb10.0Beta-linux-gcc4.4.3-64bit
To build ADMB, type 'make'
bolker at ubuntu-10:/usr/local/src/admb-10.0Beta$ sudo make
CXX=g++ CXXFLAGS="-m64"
LIBPATH=../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects
DISK=../build/admb10.0Beta-linux-gcc4.4.3-64bit/dist ADMB_CONFIGURE=1
make --directory=src --file=linux.mak
make[1]: Entering directory `/usr/local/src/admb-10.0Beta/src'
rm -rf ../build/admb10.0Beta-linux-gcc4.4.3-64bit/dist
mkdir -p
../build/admb10.0Beta-linux-gcc4.4.3-64bit/dist/{bin,lib,include,docs,docs/manuals,examples}
mkdir -p ../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/linad99-olp
mkdir -p ../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/linad99-slp
mkdir -p ../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/nh99-olp
mkdir -p ../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/nh99-olp-stub
mkdir -p ../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/tools99-olp
mkdir -p
../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/df1b2-separable-slp
mkdir -p
../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/df1b2-separable-olp
make --directory=df1b2-separable CC=gcc CXXFLAGS="-c -m64 -Wall
-Wno-deprecated -DUSE_LAPLACE -fpermissive -I../df1b2-separable
-I../nh99 -I../linad99 -I../tools99 -D__SPDLL__ -D__GNUDOS__ -Dlinux
-DOPT_LIB"
LIBPATH=../../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/df1b2-separable-olp
DISKDIR=../../build/admb10.0Beta-linux-gcc4.4.3-64bit/dist -f
optg32-rh8-laplace.mak disk
make[2]: Entering directory
`/usr/local/src/admb-10.0Beta/src/df1b2-separable'
g++ -c -m64 -Wall -Wno-deprecated -DUSE_LAPLACE -fpermissive
-I../df1b2-separable -I../nh99 -I../linad99 -I../tools99 -D__SPDLL__
-D__GNUDOS__ -Dlinux -DOPT_LIB  df1b2impspf.cpp -o
../../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/df1b2-separable-olp/df1b2impspf.obj
In file included from /usr/include/features.h:378,
                 from /usr/include/unistd.h:26,
                 from ../linad99/fvar.hpp:173,
                 from ../nh99/admodel.h:69,
                 from df1b2impspf.cpp:8:
/usr/include/gnu/stubs.h:9:27: error: gnu/stubs-64.h: No such file or
directory
df1b2impspf.cpp: In function ‘double
calculate_importance_sample_shess(const dvector&, const dvector&, const
dmatrix&, const dvector&, const dvector&, const dmatrix&,
function_minimizer*)’:
df1b2impspf.cpp:20: warning: unused variable ‘Hessadjoint’
df1b2impspf.cpp:44: warning: unused variable ‘onvar’
df1b2impspf.cpp:49: warning: unused variable ‘j’
make[2]: *** [df1b2impspf.obj] Error 1
make[2]: Leaving directory
`/usr/local/src/admb-10.0Beta/src/df1b2-separable'
make[1]: *** [dist] Error 2
make[1]: Leaving directory `/usr/local/src/admb-10.0Beta/src'
make: *** [all] Error 2