[Developers] beta compile failure on Ubuntu?

[Johnoel Ancheta]

Updated configure script is available.

http://admb-project.googlecode.com/files/configure

Download and replace the configure script in the admb-10.0Beta distribution.


On 11/10/10 11:09 AM, Ben Bolker wrote:
>    (running under VMWare Fusion on Mac OS X.6, but I don't think that
> matters)
>
>    It looks like configure is getting confused and thinking my system is
> 64-bit ... ?
>
>> uname -a
> Linux ubuntu-10 2.6.32-25-generic #45-Ubuntu SMP Sat Oct 16 19:48:22 UTC
> 2010 i686 GNU/Linux
>
> uname -m
> i686  ## indicates 32-bit kernel
>
> $ gcc -v
> Using built-in specs.
> Target: i486-linux-gnu
> Configured with: ../src/configure -v --with-pkgversion='Ubuntu
> 4.4.3-4ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs
> --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr
> --enable-shared --enable-multiarch --enable-linker-build-id
> --with-system-zlib --libexecdir=/usr/lib --without-included-gettext
> --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4
> --program-suffix=-4.4 --enable-nls --enable-clocale=gnu
> --enable-libstdcxx-debug --enable-plugin --enable-objc-gc
> --enable-targets=all --disable-werror --with-arch-32=i486
> --with-tune=generic --enable-checking=release --build=i486-linux-gnu
> --host=i486-linux-gnu --target=i486-linux-gnu
> Thread model: posix
> gcc version 4.4.3 (Ubuntu 4.4.3-4ubuntu5)
>
>
>
> bolker at ubuntu-10:/usr/local/src/admb-10.0Beta$ sudo ./configure
> checking for gcc... gcc
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ISO C89... none needed
> checking for g++... g++
> checking whether we are using the GNU C++ compiler... yes
> checking whether g++ accepts -g... yes
> checking how to run the C++ preprocessor... g++ -E
> checking for grep that handles long lines and -e... /bin/grep
> checking for egrep... /bin/grep -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking iostream usability... yes
> checking iostream presence... yes
> checking for iostream... yes
> checking for flex... flex
> checking lex output file root... lex.yy
> checking lex library... none needed
> checking whether yytext is a pointer... no
> checking for sed... yes
> checking whether C++ compiler is 64-bit enabled... yes
> checking for svnversion... yes
> configure: creating ./config.status
> config.status: creating GNUmakefile
> config.status: creating admb_configure.h
> config.status: creating scripts/bash/admb-bin
>
> Configure completed for admb10.0Beta-linux-gcc4.4.3-64bit
> To build ADMB, type 'make'
> bolker at ubuntu-10:/usr/local/src/admb-10.0Beta$ sudo make
> CXX=g++ CXXFLAGS="-m64"
> LIBPATH=../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects
> DISK=../build/admb10.0Beta-linux-gcc4.4.3-64bit/dist ADMB_CONFIGURE=1
> make --directory=src --file=linux.mak
> make[1]: Entering directory `/usr/local/src/admb-10.0Beta/src'
> rm -rf ../build/admb10.0Beta-linux-gcc4.4.3-64bit/dist
> mkdir -p
> ../build/admb10.0Beta-linux-gcc4.4.3-64bit/dist/{bin,lib,include,docs,docs/manuals,examples}
> mkdir -p ../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/linad99-olp
> mkdir -p ../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/linad99-slp
> mkdir -p ../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/nh99-olp
> mkdir -p ../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/nh99-olp-stub
> mkdir -p ../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/tools99-olp
> mkdir -p
> ../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/df1b2-separable-slp
> mkdir -p
> ../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/df1b2-separable-olp
> make --directory=df1b2-separable CC=gcc CXXFLAGS="-c -m64 -Wall
> -Wno-deprecated -DUSE_LAPLACE -fpermissive -I../df1b2-separable
> -I../nh99 -I../linad99 -I../tools99 -D__SPDLL__ -D__GNUDOS__ -Dlinux
> -DOPT_LIB"
> LIBPATH=../../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/df1b2-separable-olp
> DISKDIR=../../build/admb10.0Beta-linux-gcc4.4.3-64bit/dist -f
> optg32-rh8-laplace.mak disk
> make[2]: Entering directory
> `/usr/local/src/admb-10.0Beta/src/df1b2-separable'
> g++ -c -m64 -Wall -Wno-deprecated -DUSE_LAPLACE -fpermissive
> -I../df1b2-separable -I../nh99 -I../linad99 -I../tools99 -D__SPDLL__
> -D__GNUDOS__ -Dlinux -DOPT_LIB  df1b2impspf.cpp -o
> ../../build/admb10.0Beta-linux-gcc4.4.3-64bit/objects/df1b2-separable-olp/df1b2impspf.obj
> In file included from /usr/include/features.h:378,
>                   from /usr/include/unistd.h:26,
>                   from ../linad99/fvar.hpp:173,
>                   from ../nh99/admodel.h:69,
>                   from df1b2impspf.cpp:8:
> /usr/include/gnu/stubs.h:9:27: error: gnu/stubs-64.h: No such file or
> directory
> df1b2impspf.cpp: In function ‘double
> calculate_importance_sample_shess(const dvector&, const dvector&, const
> dmatrix&, const dvector&, const dvector&, const dmatrix&,
> function_minimizer*)’:
> df1b2impspf.cpp:20: warning: unused variable ‘Hessadjoint’
> df1b2impspf.cpp:44: warning: unused variable ‘onvar’
> df1b2impspf.cpp:49: warning: unused variable ‘j’
> make[2]: *** [df1b2impspf.obj] Error 1
> make[2]: Leaving directory
> `/usr/local/src/admb-10.0Beta/src/df1b2-separable'
> make[1]: *** [dist] Error 2
> make[1]: Leaving directory `/usr/local/src/admb-10.0Beta/src'
> make: *** [all] Error 2
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