[ADMB Users] new version of R2admb on R-forge

[dave fournier]

Ben Bolker wrote:

OK in that case one can get rid of the erros reported in the liver gamma 
function by modifying the
lex input file like this.
get rid of
 /*
    strcpy(outcommand,"cat xxglobal.tmp   xxhtop.tmp   header.tmp "
     "  xxalloc1.tmp   xxalloc2.tmp   xxalloc3.tmp   xxalloc4.tmp "
     "   xxalloc5.tmp    xxtopm.tmp    xxalloc6.tmp > ");
  */
and change to
    strcpy(outcommand,"cat xxglobal.tmp   xxhtop.tmp   header.tmp "
     "  xxalloc1.tmp   xxalloc2.tmp   xxalloc3.tmp ");
    if (report_defined)
    {
      strcat(outcommand," xxalloc4.tmp");
    }
    if (preliminary_calcs_defined)
    {
      strcat(outcommand," xxalloc5.tmp");
    }
    This file is named remod10 on my version.  I can supply other 
detailas etc if required.



> dave fournier wrote:
>   
>> Ben Bolker wrote:
>>
>> Well there is some confusion because it appears to me that Motoki was 
>> using  tpl2rem on simple.tpl
>> which has no random effects.
>> I say this because my  version of tpl2cpp does not produce any error 
>> message.
>>
>> Once that is settled
>> for  tpl2rem it would be simple modify the  cat ...  line to exclude the 
>> missing files.
>>
>>     
>
>   It is already settled.
>   As I explained, Motoki's problem came about because R2admb flagged the
> warning message about 'safe mode' as an error (it no longer does).
> Motoki got confused (I think) by the bit of code that was used to flag
> the 'xxalloc' warnings and thought that was the problem with the code.
>   By default the current version of R2admb runs simple.tpl just fine,
> with a warning message on some versions about 'safe' mode being
> deprecated.  It filters xxalloc warnings.
>
>   cheers
>      Ben
>
>
>