[ADMB Users] Making a copy of an unallocated dvector
Luis Ridao
luridao at gmail.com
Mon May 16 02:43:45 PDT 2011
Finally I got ADMB on openSUSE up and running.
Well I'm going through some models that used to work before.
So far there is one that does not seem to run properly (one with splines)
ridao at linux-kw78:~/admb/admb-10.1/myadmb> admb test_spline_2010
*** tpl2cpp test_spline_2010
*** adcomp test_spline_2010
g++ -c -O3 -Wno-deprecated -D__GNUDOS__ -Dlinux -DOPT_LIB -DUSE_LAPLACE
-fpermissive -I. -I/usr/local/admb/include test_spline_2010.cpp
*** adlink test_spline_2010
g++ -s -L/usr/local/admb/lib test_spline_2010.o -ldf1b2o -ladmod -ladt -lado
-ldf1b2o -ladmod -ladt -lado -o test_spline_2010
Done
----------------------------------------------------------------------------------------------------------
ridao at linux-kw78:~/admb/admb-10.1/myadmb> ./test_spline_2010
Making a copy of an unallocated dvector
Making a copy of an unallocated dvector
Making a copy of an unallocated dvector
Making a copy of an unallocated dvector
Making a copy of an unallocated dvector
Making a copy of an unallocated dvector
OK to here1
----------------------------------------------------------------------------------------------------------
I have "cout" the code and the problem seem to arise in the
"get_mortality_and_survivial_rates()"
function which is using "splines"
DATA_SECTION
......
init_int nNodes; // SPLINES
vector nodes(1,nNodes); // SPLINES
!! nodes.fill_seqadd(1,1);
vector ages(1,nages); // ages of data
vector ages4plus(1,nages-1); //
non-recruiting ages in the population
vector years(1,nyrs); // years of
data
int pred_year; // prediction
year
vector yield_obs(1,nyrs);
!! nyrs = nyrs - nyrs_r;
!! nyrs_surv = nyrs_surv - nyrs_r;
init_vector LO(1,nNodes)
init_vector HI(1,nNodes)
init_ivector PH(1,nNodes)
init_vector parm(1,2)
PARAMETER_SECTION
....
init_bounded_number_vector log_sel1(1,nNodes,LO,HI,PH) // SPLINES
init_bounded_number_vector log_sel2(1,nNodes,LO,HI,PH) // SPLINES
init_bounded_number_vector log_sel3(1,nNodes,LO,HI,PH) // SPLINES
vector predSel1(1,nages) // SPLINES
vector predSel2(1,nages) // SPLINES
vector predSel3(1,nages) // SPLINES
PROCEDURE_SECTION
cout << " OK to here1 " << endl;
get_mortality_and_survivial_rates();
cout << " OK to here2 " << endl;
FUNCTION get_mortality_and_survivial_rates
int i, j;
//calculate the selectivity from the sel_coffs ---------------------
for (i=1;i<=nyrs;i++)
{
if (i<=16)
{
vcubic_spline_function qs(nodes,log_sel1,parm(1),parm(2)); // SPLINES
predSel1.sub(1,9)=qs(ages.sub(1,9));
predSel1(10)=0;
predSel1(11)=0;
predSel1(12)=0;
}
else
{
if (i<=35)
{
.........
........
This code used to work under version admb-10 but not in the current
admb-10.1
Thanks in advance
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