[ADMB Users] testing hybrid mcmc
mbrooks at ufl.edu
Fri Aug 24 11:01:08 PDT 2012
Hi ADMB users,
This is essentially the simple tpl file that Dave told me to try, but I added the random effects vector u.
I can compile it, then run it with the command
./hybridsimple_re -hybrid -hyeps .3 -hynsteps 2 -mcmc2 10
After playing around for a while, I can't figure out what the parameter -hynsteps is doing.
I also can't seem to use mcsave to thin the samples.
Anybody know how to use -hynsteps and -mcsave in hybrid mcmc sampling?
Postdoctoral Researcher, Ponciano Lab
Biology Department, University of Florida
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