[ADMB Users] Problems with RE model, using FUNCTIONs for integration

[dave fournier]

On 12-11-30 11:15 AM, Jeff Laake wrote:

Well I didn't say to remove the Initialization section unless you 
provide a pin file.
However it may work anyway with the default values.  It appears to.

Those are not errors they are warnings.  I ignore all warnings about 
const stuff. In this
case they are not a problem.   This is just a junk model to check that 
the adromb stuff
works.  There is probably something else wrong with your model. Almost 
for sure
you are walking out of an array. Are you using the safe library?


> So when I remove the INITIALIZATION_SECTION out of t.tpl,below is what 
> I get when I compile which looks very much like what I got when I did 
> it with my tpl file.  I think Mark experienced something similar. It 
> creates a t.exe but when I tried with my example the code didn't work 
> but maybe it was another issue.
>
> When I plow ahead and run your example t without initial values I get.
> Model file: t
> Negative log-likelihood: 629.367
> Coefficients:
>    log_tau     log_nu       beta
>  1.7637522 -0.4109849  0.5500000
>
> So maybe it is working and the compile errors are unimportant. Can you 
> verify that?
>
> thanks --jeff
>
> > compile_admb("t",re=T,verbose=T)
> compiling with args: ' -r ' ...
> compile output:
>   *** tpl2rem t xxglobal.tmp xxhtop.tmp header.tmp xxalloc1.tmp 
> xxalloc2.tmp xxalloc3.tmp xxalloc4.tmp xxtopm.tmp xxalloc6.tmp         
> 1 file(s) copied. tfile1 tfile2 tfile3 tfile4         1 file(s) 
> copied.  *** adcomp -r t g++ -c -O3 -Wno-deprecated -D__GNUDOS__ 
> -Dlinux -DOPT_LIB -DUSE_LAPLACE -fpermissive -I. -I"c:/admb\include" 
> -I"c:/admb\contrib" -o t.obj t.cpp  *** adlink -r t g++ -s -static 
> -L"c:/admb\lib" -L"c:/admb\contrib"  t.obj -ldf1b2o -ladmod -lcontribo 
> -ladt -lado -ldf1b2o -ladmod -ladt -lcontribo -lado -lcontribo -o t  Done
> compile log:
> t.cpp: In member function 'dvariable model_parameters::trapzd(double, 
> double, int, const dvariable&)':
> t.cpp:102:35: warning: passing 'const dvariable' as 'this' argument of 
> 'dvariable& dvariable::operator=(const prevariable&)' discards 
> qualifiers [-fpermissive]
> t.cpp:109:36: warning: passing 'const dvariable' as 'this' argument of 
> 'dvariable& dvariable::operator=(const prevariable&)' discards 
> qualifiers [-fpermissive]
> t.cpp: In member function 'df1b2variable 
> df1b2_parameters::trapzd(double, double, int, const df1b2variable&)':
> t.cpp:254:35: warning: passing 'const df1b2variable' as 'this' 
> argument of 'df1b2variable& df1b2variable::operator=(const 
> df1b2variable&)' discards qualifiers [-fpermissive]
> t.cpp:261:36: warning: passing 'const df1b2variable' as 'this' 
> argument of 'df1b2variable& df1b2variable::operator=(const 
> df1b2variable&)' discards qualifiers [-fpermissive]
> >
>