[ADMB Users] -lprof -iprint

CHRIS GRANDIN cgrandin at shaw.ca
Wed Sep 17 09:11:15 PDT 2014


Hi Laurie,
 I'd like to see what you did but my line 154 in model33.cpp has nothing on it. Perhaps you have an older version of the source. Can you send a code snippet including lines around the line you changed so I can find it. Thanks
Chris

----- Original Message -----
From: "laurie" <lauriekell at gmail.com>
To: "Steve Martell" <SteveM at iphc.int>, "CHRIS GRANDIN" <cgrandin at shaw.ca>, "Jim Ianelli" <jim.ianelli at noaa.gov>
Cc: "ADMB" <users at admb-project.org>
Sent: Wednesday, September 17, 2014 1:01:41 AM
Subject: Re: [ADMB Users] -lprof -iprint

Thanks for all your help. I am running linux, calling my exe from R and 
running it in parallel.

The print output slows things down and as I am simulation testing the 
profile method I am never going to read the screen outputs.

What I did was to set ad_printf=0 in the admb source code (model33.cpp 
ln 154) and recompiled the binaries. This shut it up, although there is 
still a series of numbers being printed.

Laurie



On 16/09/14 22:59, Steve Martell wrote:
> Could we not add the noprintx=1, which is set with the command line option -nox, to the lprof routines?
> S
> On Sep 16, 2014, at 1:40 PM, CHRIS GRANDIN <cgrandin at shaw.ca> wrote:
>
>> I simply issue the command like this:
>>
>> modelname.exe 1> runoutput.log 2>&1
>>
>> which writes it all out to a file you can look at and search with a proper editor afterwards. It is much faster than having everything written to the terminal. The 1> writes the output to the file runoutput.log and the 2>&1 pipes any errors into the file so you see nothing on the console.
>>
>> Chris
>>
>> ----- Original Message -----
>> From: "Jim Ianelli - NOAA Federal" <jim.ianelli at noaa.gov>
>> To: "laurie" <lauriekell at gmail.com>
>> Cc: "ADMB" <users at admb-project.org>
>> Sent: Tuesday, September 16, 2014 11:32:04 AM
>> Subject: Re: [ADMB Users] -lprof -iprint
>>
>>
>>
>>
>> This has long been something I've noted and just never complained about it. Knowing I have the ability to fix it now...maybe I should do something about it.
>>
>>
>> Related I think it'd be useful to have something like a "LIKE_PROF_SECTION" where one could write stuff to a file at the mode along each point of the resulting grid. Or perhaps there's another way to do this that I'm unaware of.
>>
>>
>> Cheers,
>> Jim
>>
>>
>> On Mon, Sep 15, 2014 at 4:23 AM, laurie < lauriekell at gmail.com > wrote:
>>
>>
>> I would to perform profile likelihood calculations without all the screen output.
>>
>> However, the -iprint 0 command line option doesn't seem to work if you also use -lprof.
>>
>> Laurie
>>
>> ______________________________ _________________
>> Users mailing list
>> Users at admb-project.org
>> http://lists.admb-project.org/ mailman/listinfo/users
>>
>>
>>
>>
>> --
>>
>>
>>
>> James Ianelli
>> NMFS/NOAA Building 4
>> 7600 Sand Pt Way NE
>> Seattle WA 98115
>>
>>
>>
>> 206 526 6510
>>
>> Visit the ADMB project http://admb-project.org/
>>
>>
>>
>> _______________________________________________
>> Users mailing list
>> Users at admb-project.org
>> http://lists.admb-project.org/mailman/listinfo/users
>> _______________________________________________
>> Users mailing list
>> Users at admb-project.org
>> http://lists.admb-project.org/mailman/listinfo/users
>
> ________________________________
>
> This internet e-mail message, and any files transmitted with it, contains confidential, privileged information that is intended only for the addressee. If you have received this e-mail message in error, please call us at (206) 634-1838 collect if necessary) and ask to speak to the message sender. Nothing in this e-mail or the act of transmitting it, is to be construed as a waiver of any rights or privileges enjoyed by the sender or the International Pacific Halibut Commission pursuant to the International Organizations Immunities Act, 22 U.S.C. Sec. 288 et seq.



More information about the Users mailing list