[ADMB Users] new version of R2admb on R-forge
bolker at ufl.edu
Sat Aug 21 08:50:36 PDT 2010
Ben Bolker wrote:
> That's not exactly the situation in which the errors/warnings occur.
> They happen when one runs tpl2rem on a RE model that is "too simple":
> as pointed out by Tom Wainwright on March 10
> this is reproducible in the "liver_gamma" example that comes with ADMB:
>> tpl2rem liver_gamma
> cat: xxalloc4.tmp: No such file or directory
> cat: xxalloc5.tmp: No such file or directory
> Error executing command cat xxglobal.tmp xxhtop.tmp header.tmp
> xxalloc1.tmp xxalloc2.tmp xxalloc3.tmp xxalloc4.tmp
> xxalloc5.tmp xxtopm.tmp xxalloc6.tmp > liver_gamma.cpp
> At least, it happens with my installation (release 9.1, running on
> Ubuntu 10.04).
PS I may be miscommunicating here. To try to be clear:
1. ADMB produces spurious error messages when tpl2rem'ing specific
"simple" TPL files. My R2admb code attempts to filter these messages out.
2. In some versions of ADMB (not the one I am running), using "-s"
provokes a warning message that "safe mode" is deprecated. In its
current version, R2admb uses 'safe mode' by default (i.e. adding the
"-s" flag to the argument list: should it not do that?), so this warning
came up when Motoki ran simple.tpl through R2admb. The version of R2admb
that I posted a few days ago treated this as an error and stopped; I
have since added code to R2admb that treats any message from ADMB with
the string "warning:" in it as an (R) warning rather than error.
I'm not quite sure which set of errors Dave is addressing.
bbolker at gmail.com , bolker at mcmaster.ca
GPG key: http://www.math.mcmaster.ca/~bolker/benbolker-publickey.asc
-------------- next part --------------
A non-text attachment was scrubbed...
Size: 261 bytes
Desc: OpenPGP digital signature
More information about the Users