[ADMB Users] gradient_structure problem with nbinom glmm.admb in R
davef at otter-rsch.com
Sun Jun 12 07:13:08 PDT 2011
Assuming that you got the formula right (I don't have much interest in
arcane R stuff),
the problem is that ADMB programs were designed to be run from the
The program needs the command line option
where N >= 58531, lets say N=60000 to make it simple.
The R part of glmmadmb should be able to figure this out from the number
of random effects,
but that is not implemented to date. Maybe someone wants to do that?
Failing that you can run the model by hand by saving the temporary files and
running the model from the command line such as
xxxx -mno 60000
replace xxx with the current name of the exe.
Then you can find the usual output in a file named xxxx.std
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