[ADMB Users] compiling ADMB | RHEL 5.5

Johnoel Ancheta johnoel at hawaii.edu
Wed Mar 23 17:54:43 PDT 2011


Replace the file scripts/configure/GNUmakefile.in with the attached file,
then configure,make,make install.


On 3/21/11 11:16 AM, Johnoel Ancheta wrote:
> Yes, it was fixed, but not yet released.  After running configure,
> edit the generated GNUmakefile.  Locate the line
>
> install -m 555 scripts/g++/admb-bin /usr/local/bin/admb
>
> and change to
>
> install -m 555 scripts/*admb*/admb-bin /usr/local/bin/admb
>
> then
>
> $ make install.
>
> An easier approach would be to just copy the distribution folder
> build/admb-*/admb-* to your home folder, then set ADMB_HOME
> to that.
>
> On 3/21/11 11:07 AM, aaron wrote:
>> Hum this is really interesting.
>> What were the warnings? It looks like the 32bit compile worked ok...
>> except that make  looked for admb-bin in the wrong directory.  This 
>> could have been fixed recently.
>> The configure log would be good to see.
>>
>> Aaron
>>
>>
>>
>>
>> On 03/21/2011 01:18 PM, Evan Cooch wrote:
>>> As an attachment -- to you off-list, or to the list at large?
>>>
>>> On 3/21/2011 3:37 PM, Johnoel Ancheta wrote:
>>>> Can you send the config.log?
>>>>
>>>> On 3/20/11 7:24 AM, Evan Cooch wrote:
>>>>> Greetings --
>>>>>
>>>>> I've been trying (without success) to compile ADMB (10.x) from 
>>>>> source on a machine  running x86_64 RHEL (which, as many or you 
>>>>> might know, uses gcc 4.1.2).  I'm hoping the solution isn't as 
>>>>> simple as 'you have to have gcc 4.4.x to compile ADMB -- if so, 
>>>>> then this lets out RHEL, CentOS, and Scientific Linux, all of whom 
>>>>> stay far from the bleeding edge and use 4.1.x).
>>>>>
>>>>> So, here is what I've tried -- followed the basic instructions in 
>>>>> the README file -- downloaded latest admb-10.0.zip. Extracted, 
>>>>> then (from bash shell) run ./configure BUILD_64BIT=yes
>>>>>
>>>>>
>>>>> While the screen dump didn't indicate any problems, looking deeper 
>>>>> into the configure.log showed multiple 'issues'. First, picks up 
>>>>> gcc fine
>>>>>
>>>>> configure:2117: checking for gcc
>>>>> configure:2133: found /usr/bin/gcc
>>>>> configure:2144: result: gcc
>>>>> configure:2373: checking for C compiler version
>>>>> configure:2382: gcc --version >&5
>>>>> gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48)
>>>>>
>>>>>
>>>>> First errors show up when looking at C++ preprocessor:
>>>>>
>>>>> configure:3128: checking how to run the C++ preprocessor
>>>>> configure:3155: g++ -E  conftest.cpp
>>>>> configure:3155: $? = 0
>>>>> configure:3169: g++ -E  conftest.cpp
>>>>> conftest.cpp:9:28: error: ac_nonexistent.h: No such file or directory
>>>>> configure:3169: $? = 1
>>>>> configure: failed program was:
>>>>> | /* confdefs.h */
>>>>> | #define PACKAGE_NAME "ADMB"
>>>>> | #define PACKAGE_TARNAME "admb"
>>>>> | #define PACKAGE_VERSION "10.0"
>>>>> | #define PACKAGE_STRING "ADMB 10.0"
>>>>> | #define PACKAGE_BUGREPORT "users at admb-project.org"
>>>>> | #define PACKAGE_URL ""
>>>>> | /* end confdefs.h.  */
>>>>> | #include <ac_nonexistent.h>
>>>>> configure:3194: result: g++ -E
>>>>> configure:3214: g++ -E  conftest.cpp
>>>>> configure:3214: $? = 0
>>>>> configure:3228: g++ -E  conftest.cpp
>>>>> conftest.cpp:9:28: error: ac_nonexistent.h: No such file or directory
>>>>> configure:3228: $? = 1
>>>>> configure: failed program was:
>>>>> | /* confdefs.h */
>>>>> | #define PACKAGE_NAME "ADMB"
>>>>> | #define PACKAGE_TARNAME "admb"
>>>>> | #define PACKAGE_VERSION "10.0"
>>>>> | #define PACKAGE_STRING "ADMB 10.0"
>>>>> | #define PACKAGE_BUGREPORT "users at admb-project.org"
>>>>> | #define PACKAGE_URL ""
>>>>> | /* end confdefs.h.  */
>>>>>
>>>>> and later on
>>>>>
>>>>> configure:3621: checking lex library
>>>>> configure:3635: g++ -o conftest -g -O2   conftest.cpp >&5
>>>>> conftest.l: In function 'int yylex()':
>>>>> conftest.l:6: error: 'input' was not declared in this scope
>>>>> configure:3635: $? = 1
>>>>> configure: failed program was:
>>>>> | /* confdefs.h */
>>>>> | #define PACKAGE_NAME "ADMB"
>>>>> | #define PACKAGE_TARNAME "admb"
>>>>> | #define PACKAGE_VERSION "10.0"
>>>>> | #define PACKAGE_STRING "ADMB 10.0"
>>>>> | #define PACKAGE_BUGREPORT "users at admb-project.org"
>>>>> | #define PACKAGE_URL ""
>>>>> | #define STDC_HEADERS 1
>>>>> | #define HAVE_SYS_TYPES_H 1
>>>>> | #define HAVE_SYS_STAT_H 1
>>>>> | #define HAVE_STDLIB_H 1
>>>>> | #define HAVE_STRING_H 1
>>>>> | #define HAVE_MEMORY_H 1
>>>>> | #define HAVE_STRINGS_H 1
>>>>> | #define HAVE_INTTYPES_H 1
>>>>> | #define HAVE_STDINT_H 1
>>>>> | #define HAVE_UNISTD_H 1
>>>>> | #define HAVE_IOSTREAM 1
>>>>> | /* end confdefs.h.  */
>>>>> | /* A lexical scanner generated by flex*/
>>>>> |
>>>>> | /* Scanner skeleton version:
>>>>> |  * $Header: /home/daffy/u0/vern/flex/RCS/flex.skl,v 2.91 
>>>>> 96/09/10 16:58:48 vern Exp $
>>>>> |  */
>>>>>
>>>>>
>>>>> Tried a 32-bit build -- same errors.
>>>>>
>>>>> Now, I did proceed and try make, lots of warnings, but no outright 
>>>>> fails. However, make install crashed and burned:
>>>>>
>>>>> install -d -m 555 /usr/local/admb/bin /usr/local/admb/include 
>>>>> /usr/local/admb/lib /usr/local/admb/docs /usr/local/admb/examples
>>>>> install -m 555 
>>>>> build/admb-10.0-linux-gcc4.1.2-64bit/admb-10.0-linux-gcc4.1.2-64bit/bin/* 
>>>>> /usr/local/admb/bin
>>>>> install -m 444 
>>>>> build/admb-10.0-linux-gcc4.1.2-64bit/admb-10.0-linux-gcc4.1.2-64bit/include/* 
>>>>> /usr/local/admb/include
>>>>> install -m 444 
>>>>> build/admb-10.0-linux-gcc4.1.2-64bit/admb-10.0-linux-gcc4.1.2-64bit/lib/* 
>>>>> /usr/local/admb/lib
>>>>> install -m 444 LICENSE /usr/local/admb
>>>>> install -m 444 README.txt /usr/local/admb
>>>>> install -m 444 Makefile /usr/local/admb
>>>>> install -m 555 scripts/g++/admb-bin /usr/local/bin/admb
>>>>> install: cannot stat `scripts/g++/admb-bin': No such file or directory
>>>>> make: *** [install] Error 1
>>>>>
>>>>>
>>>>> At this point, I'll take any and all suggestions, no matter how 
>>>>> trivial (save for installing gcc 4.4.x).
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> Users mailing list
>>>>> Users at admb-project.org
>>>>> http://lists.admb-project.org/mailman/listinfo/users
>>>>
>>>>
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>>>
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>>
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>
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