[ADMB Users] Official ADMB journal publication

[anders at nielsensweb.org]

Hi Kray,

I am not sure I completely understand your question.

There is some description of this in the manual.

Basically you have to declare eg:

   likeprof_number myOutput

in the parameters section, and then assign that to
something in the procedure section.

   myOutput= ...

I have a few examples in an old presentation, which also
includes a simple way to read those files into R. You can
find it here:

   http://nielsensweb.org/un.pdf

Cheers,

Anders.

On Wed, 9 Nov 2011 13:05:26 -0800 (PST), kvk wrote:
> This is a very helpful paper! Thanks!
>
> I noticed in section 2.3.1 and the discussion of profile likelihood
> the sentence:
>
> "The profile likelihood curve l(phi) is a graphical display of the
> information contained in the data about the interest parameters."
>
> Is this a new output file designed for graphical analysis? Or does
> there need to be formal output statement written to define and 
> extract
> it?
>
> Thanks!!
>
> Kray
>
> On Oct 26, 10:22 am, Mark Maunder <mmaun... at iattc.org> wrote:
>> Dear ADMB users,
>>
>> A journal publication describing ADMB has just been published and is 
>> freely available through open access 
>> athttp://www.tandfonline.com/doi/abs/10.1080/10556788.2011.597854
>>
>> It has not yet been assigned a journal issue or page numbers, but 
>> this will be the recommended citation for ADMB for any publications 
>> using ADMB.
>>
>> Regards,
>>
>> Mark
>>
>> Mark Maunder
>>
>> IATTC fall workshop: Using Oceanography for Fisheries Stock 
>> Assessment and Management
>> 11-14 October 2011, La Jolla, 
>> CAhttp://www.fisheriesstockassessment.com/TikiWiki/tiki-index.php?page=...
>>
>> Head of the Stock Assessment Program
>> Inter-American  Tropical Tuna Commission
>>
>> President
>> ADMB Foundation
>>
>> 8604 La Jolla Shores Drive
>> La Jolla, CA, 92037-1508, USA
>>
>> Tel: (858) 546-7027
>> Fax: (858) 546-7133
>> 
>> mmaun... at iattc.org<mailto:mmaun... at iattc.org>http://www.fisheriesstockassessment.com/TikiWiki/tiki-index.php?page=...
>>
>> Visit the AD Model Builder project at
>>  http://admb-project.org/
>>
>> See the following website for information on fisheries stock 
>> assessmenthttp://www.fisheriesstockassessment.com/
>>
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